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oborel / obo-relations

RO is an ontology of relations for use with biological ontologies
http://oborel.github.io/
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[NTR] has_high/low_plasma_membrane_amount #576

Closed shawntanzk closed 2 years ago

shawntanzk commented 2 years ago

Related to https://github.com/obophenotype/cell-ontology/issues/1481

Currently CL uses custom relations: http://purl.obolibrary.org/obo/cl#has_low_plasma_membrane_amount http://purl.obolibrary.org/obo/cl#has_high_plasma_membrane_amount

Would like to clean it up and move to RO

rdfs:label : has high plasma membrane amount definition: A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface [PMID:19243617] SubProperty Of: has plasma membrane part example of usage: 'Ly-76 high positive erythrocyte' equivalent to 'enucleate erythrocyte' and (has_high_plasma_membrane_amount some 'lymphocyte antigen 76 (mouse)')

rdfs:label : has low plasma membrane amount definition: A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface. [PMID:19243617] SubProperty Of: has plasma membrane part example of usage: 'DN2b thymocyte' equivalent to 'DN2 thymocyte' and (has_low_plasma_membrane_amount some 'mast/stem cell growth factor receptor')

shawntanzk commented 2 years ago

pinging people from the paper that I know github tags of: @cmungall @addiehl @scheuerm Happy for you to make suggestions/edits/comments or tag other people from the paper etc.