ocbe-uio / DIscBIO

A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
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PPI error #24

Closed wleoncio closed 3 years ago

wleoncio commented 3 years ago

Error

Error: `file` must be a string, raw vector or a connection.
Traceback:
1. PPI(data, FileName)
2. read_tsv(repo_content)
3. read_delimited(file, tokenizer, col_names = col_names, col_types = col_types, 
 .     locale = locale, skip = skip, skip_empty_rows = skip_empty_rows, 
 .     comment = comment, n_max = n_max, guess_max = guess_max, 
 .     progress = progress)
4. col_spec_standardise(data, skip = skip, skip_empty_rows = skip_empty_rows, 
 .     comment = comment, guess_max = guess_max, col_names = col_names, 
 .     col_types = col_types, tokenizer = tokenizer, locale = locale)
5. datasource(file, skip = skip, skip_empty_rows = skip_empty_rows, 
 .     comment = comment)
6. stop("`file` must be a string, raw vector or a connection.", 
 .     call. = FALSE)

Steps to reproduce

[13.39] Salim Ghannoum I am always running the noebook ​[13.39] Salim Ghannoum CTCs-Binder-Part2.ipynb ​[13.40] Salim Ghannoum I printed the repo_content image

So it is not empty, I dont know why read_tsv() is not working

image

wleoncio commented 3 years ago

Possibly fixed by 4c3e0a5dc665d335985d846255f2e3191513b70f.