The packages' internal functions are scattered across several files on the R/ folder. For example, there's the internal-functions.R file which contains several functions, then there's samr-adapted.R containing internal, adapted functions from the samr package, then there are a few individually-isolated functions like reformatSiggenes.R and replaceDecimals.R. It would be great if there were more consistency on this.
One suggestion would be to keep the samr functions separated and aggregate all the rest into internal-functions.R.
The packages' internal functions are scattered across several files on the
R/folder. For example, there's the internal-functions.R file which contains several functions, then there's samr-adapted.R containing internal, adapted functions from the samr package, then there are a few individually-isolated functions like reformatSiggenes.R and replaceDecimals.R. It would be great if there were more consistency on this.One suggestion would be to keep the samr functions separated and aggregate all the rest into internal-functions.R.