Check init_db process works with sharklife, medins and koster_seafloor_obs

ocean-data-factory-sweden / kso-utils

Utility functions for KSO notebooks.

MIT License

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Check init_db process works with sharklife, medins and koster_seafloor_obs #140

Closed victor-wildlife closed 1 year ago

victor-wildlife commented 1 year ago

The latest changes to the kso system were tested with spyfish, cmpa tex and the template project but we haven't tested it with SNIC projects.

[ ] Specify to get_koster_col_names if Project_name in ["Sharklife", "Medins", "Koster_Seafloor_Obs"]

victor-wildlife commented 1 year ago

@jannesgg do we still need to Connect to SNIC as a client and get the sftp? I am just looking at the server utils and if the server is SNIC it goes through this process but I am no,t sure if we still need it

victor-wildlife commented 1 year ago

I have done a bit of tidying up so that the SNIC projects work as local projects (not fpts, client and so on). @jannesgg and @Bergylta I have also updated the movies.csv files in the Medins and Sharklife projects to match the column requirements (specifically I added the "fpath" column and renamed the "Author" to "author" column)

victor-wildlife commented 1 year ago

I also modified the decimalLatitude of the sites csv file of the Sharklife project because it had "−" instead of "-". @Bergylta just tagging you here so that you are aware of this typo moving forward. I think it might be an issue with exporting csv files from Excel??