Tutorial 8 spyfish B

[Bergylta]

🐛 Bug

A clear and concise description of what the bug is.

To Reproduce (REQUIRED)

Input:

# Save the name of the project
project = p_utils.find_project(project_name=project_name.value)

# Initiate pp
pp = ProjectProcessor(project)

Output:

FileNotFoundError                         Traceback (most recent call last)
File /usr/lib/python3.8/pathlib.py:1288, in Path.mkdir(self, mode, parents, exist_ok)
   1287 try:
-> 1288     self._accessor.mkdir(self, mode)
   1289 except FileNotFoundError:

FileNotFoundError: [Errno 2] No such file or directory: 'E:/SpyFish/BOPRC sites'

During handling of the above exception, another exception occurred:

FileNotFoundError                         Traceback (most recent call last)
File /usr/lib/python3.8/pathlib.py:1288, in Path.mkdir(self, mode, parents, exist_ok)
   1287 try:
-> 1288     self._accessor.mkdir(self, mode)
   1289 except FileNotFoundError:

FileNotFoundError: [Errno 2] No such file or directory: 'E:/SpyFish'

During handling of the above exception, another exception occurred:

OSError                                   Traceback (most recent call last)
Cell In[79], line 5
      2 project = p_utils.find_project(project_name=project_name.value)
      4 # Initiate pp
----> 5 pp = ProjectProcessor(project)

File /usr/src/app/kso/kso_utils/kso_utils/project.py:64, in ProjectProcessor.__init__(self, project)
     61 self.connect_to_server()
     63 # Map initial csv files
---> 64 self.map_init_csv()
     66 # Create empty db and populate with local csv files data
     67 self.setup_db()

File /usr/src/app/kso/kso_utils/kso_utils/project.py:107, in ProjectProcessor.map_init_csv(self)
    105 # Create the folder to store the csv files if not exist
    106 if not os.path.exists(self.project.csv_folder):
--> 107     Path(self.project.csv_folder).mkdir(parents=True, exist_ok=True)
    108     # Recursively add permissions to folders created
    109     [
    110         os.chmod(root, 0o777)
    111         for root, dirs, files in os.walk(self.project.csv_folder)
    112     ]

File /usr/lib/python3.8/pathlib.py:1292, in Path.mkdir(self, mode, parents, exist_ok)
   1290     if not parents or self.parent == self:
   1291         raise
-> 1292     self.parent.mkdir(parents=True, exist_ok=True)
   1293     self.mkdir(mode, parents=False, exist_ok=exist_ok)
   1294 except OSError:
   1295     # Cannot rely on checking for EEXIST, since the operating system
   1296     # could give priority to other errors like EACCES or EROFS

File /usr/lib/python3.8/pathlib.py:1292, in Path.mkdir(self, mode, parents, exist_ok)
   1290     if not parents or self.parent == self:
   1291         raise
-> 1292     self.parent.mkdir(parents=True, exist_ok=True)
   1293     self.mkdir(mode, parents=False, exist_ok=exist_ok)
   1294 except OSError:
   1295     # Cannot rely on checking for EEXIST, since the operating system
   1296     # could give priority to other errors like EACCES or EROFS

File /usr/lib/python3.8/pathlib.py:1288, in Path.mkdir(self, mode, parents, exist_ok)
   1286     self._raise_closed()
   1287 try:
-> 1288     self._accessor.mkdir(self, mode)
   1289 except FileNotFoundError:
   1290     if not parents or self.parent == self:

OSError: [Errno 38] Function not implemented: 'E:'

Expected behavior

Environment

If applicable, add screenshots to help explain your problem.

• OS: [e.g. Ubuntu]
• GPU [e.g. 2080 Ti]

Additional context

Add any other context about the problem here.

[victor-wildlife]

@Bergylta to run Spyfish BOPRC users need access to the local drive the researchers in NZ use so I will check this tutorial works on their end