Permission denied when initiating the projectprocessor

[donkyjohn]

🐛 Bug

A clear and concise description of what the bug is. I run into a permission error: PermissionError: [Errno 13] Permission denied: '[/mimer]

To Reproduce (REQUIRED)

Input:

I'm running into this issue when i'm trying to run the process_aggregations notebook. 

Output:

INFO:root:Koster_Seafloor_Obs loaded succesfully
INFO:root:Running locally, no external connection to server needed.
---------------------------------------------------------------------------
FileNotFoundError                         Traceback (most recent call last)
File [/opt/tljh/user/lib/python3.10/pathlib.py:1175](https://album.cloudina.org/opt/tljh/user/lib/python3.10/pathlib.py#line=1174), in Path.mkdir(self, mode, parents, exist_ok)
   1174 try:
-> 1175     self._accessor.mkdir(self, mode)
   1176 except FileNotFoundError:

FileNotFoundError: [Errno 2] No such file or directory: '[/mimer/NOBACKUP/groups/snic2021-6-9/db_starter/csv_Koster_Seafloor_Obs](https://album.cloudina.org/mimer/NOBACKUP/groups/snic2021-6-9/db_starter/csv_Koster_Seafloor_Obs)'

During handling of the above exception, another exception occurred:

FileNotFoundError                         Traceback (most recent call last)
File [/opt/tljh/user/lib/python3.10/pathlib.py:1175](https://album.cloudina.org/opt/tljh/user/lib/python3.10/pathlib.py#line=1174), in Path.mkdir(self, mode, parents, exist_ok)
   1174 try:
-> 1175     self._accessor.mkdir(self, mode)
   1176 except FileNotFoundError:

FileNotFoundError: [Errno 2] No such file or directory: '[/mimer/NOBACKUP/groups/snic2021-6-9/db_starter](https://album.cloudina.org/mimer/NOBACKUP/groups/snic2021-6-9/db_starter)'

During handling of the above exception, another exception occurred:

FileNotFoundError                         Traceback (most recent call last)
File [/opt/tljh/user/lib/python3.10/pathlib.py:1175](https://album.cloudina.org/opt/tljh/user/lib/python3.10/pathlib.py#line=1174), in Path.mkdir(self, mode, parents, exist_ok)
   1174 try:
-> 1175     self._accessor.mkdir(self, mode)
   1176 except FileNotFoundError:

FileNotFoundError: [Errno 2] No such file or directory: '[/mimer/NOBACKUP/groups/snic2021-6-9](https://album.cloudina.org/mimer/NOBACKUP/groups/snic2021-6-9)'

During handling of the above exception, another exception occurred:

FileNotFoundError                         Traceback (most recent call last)
File [/opt/tljh/user/lib/python3.10/pathlib.py:1175](https://album.cloudina.org/opt/tljh/user/lib/python3.10/pathlib.py#line=1174), in Path.mkdir(self, mode, parents, exist_ok)
   1174 try:
-> 1175     self._accessor.mkdir(self, mode)
   1176 except FileNotFoundError:

FileNotFoundError: [Errno 2] No such file or directory: '[/mimer/NOBACKUP/groups](https://album.cloudina.org/mimer/NOBACKUP/groups)'

During handling of the above exception, another exception occurred:

FileNotFoundError                         Traceback (most recent call last)
File [/opt/tljh/user/lib/python3.10/pathlib.py:1175](https://album.cloudina.org/opt/tljh/user/lib/python3.10/pathlib.py#line=1174), in Path.mkdir(self, mode, parents, exist_ok)
   1174 try:
-> 1175     self._accessor.mkdir(self, mode)
   1176 except FileNotFoundError:

FileNotFoundError: [Errno 2] No such file or directory: '[/mimer/NOBACKUP](https://album.cloudina.org/mimer/NOBACKUP)'

During handling of the above exception, another exception occurred:

PermissionError                           Traceback (most recent call last)
Cell In[4], line 5
      2 project = p_utils.find_project(project_name=project_name.value)
      4 # Initiate pp
----> 5 pp = ProjectProcessor(project)

File [~/.local/lib/python3.10/site-packages/kso_utils/project.py:58](https://album.cloudina.org/user/kso-benjamin/~/.local/lib/python3.10/site-packages/kso_utils/project.py#line=57), in ProjectProcessor.__init__(self, project)
     55 self.connect_to_server()
     57 # Map initial csv files
---> 58 self.map_init_csv()
     60 # Create empty db and populate with local csv files data
     61 self.setup_db()

File [~/.local/lib/python3.10/site-packages/kso_utils/project.py:95](https://album.cloudina.org/user/kso-benjamin/~/.local/lib/python3.10/site-packages/kso_utils/project.py#line=94), in ProjectProcessor.map_init_csv(self)
     93 # Create the folder to store the csv files if not exist
     94 if not Path(self.project.csv_folder).exists():
---> 95     Path(self.project.csv_folder).mkdir(parents=True, exist_ok=True)
     97     # Recursively add permissions to folders created
     98     for root, dirs, files in Path(self.project.csv_folder).iterdir():

File [/opt/tljh/user/lib/python3.10/pathlib.py:1179](https://album.cloudina.org/opt/tljh/user/lib/python3.10/pathlib.py#line=1178), in Path.mkdir(self, mode, parents, exist_ok)
   1177     if not parents or self.parent == self:
   1178         raise
-> 1179     self.parent.mkdir(parents=True, exist_ok=True)
   1180     self.mkdir(mode, parents=False, exist_ok=exist_ok)
   1181 except OSError:
   1182     # Cannot rely on checking for EEXIST, since the operating system
   1183     # could give priority to other errors like EACCES or EROFS

File [/opt/tljh/user/lib/python3.10/pathlib.py:1179](https://album.cloudina.org/opt/tljh/user/lib/python3.10/pathlib.py#line=1178), in Path.mkdir(self, mode, parents, exist_ok)
   1177     if not parents or self.parent == self:
   1178         raise
-> 1179     self.parent.mkdir(parents=True, exist_ok=True)
   1180     self.mkdir(mode, parents=False, exist_ok=exist_ok)
   1181 except OSError:
   1182     # Cannot rely on checking for EEXIST, since the operating system
   1183     # could give priority to other errors like EACCES or EROFS

    [... skipping similar frames: Path.mkdir at line 1179 (2 times)]

File [/opt/tljh/user/lib/python3.10/pathlib.py:1179](https://album.cloudina.org/opt/tljh/user/lib/python3.10/pathlib.py#line=1178), in Path.mkdir(self, mode, parents, exist_ok)
   1177     if not parents or self.parent == self:
   1178         raise
-> 1179     self.parent.mkdir(parents=True, exist_ok=True)
   1180     self.mkdir(mode, parents=False, exist_ok=exist_ok)
   1181 except OSError:
   1182     # Cannot rely on checking for EEXIST, since the operating system
   1183     # could give priority to other errors like EACCES or EROFS

File [/opt/tljh/user/lib/python3.10/pathlib.py:1175](https://album.cloudina.org/opt/tljh/user/lib/python3.10/pathlib.py#line=1174), in Path.mkdir(self, mode, parents, exist_ok)
   1171 """
   1172 Create a new directory at this given path.
   1173 """
   1174 try:
-> 1175     self._accessor.mkdir(self, mode)
   1176 except FileNotFoundError:
   1177     if not parents or self.parent == self:

PermissionError: [Errno 13] Permission denied: '[/mimer](https://album.cloudina.org/mimer)'

Expected behavior

A clear and concise description of what you expected to happen.

Environment

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• OS: [e.g. Ubuntu]
• GPU [e.g. 2080 Ti]

Additional context

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[jannesgg]

@donkyjohn I think this has been fixed recently, do a git pull and let me know if the issue still persists.