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ococrook / bandle

An R package for Bayesian analysis of differential localisation experiments
https://ococrook.github.io/bandle/
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Request: verbose output #26

Open melonora opened 2 months ago

melonora commented 2 months ago

Hello developers! I am currently having a lab member work with your library. The bandle function runs for a while so I think it would be nice if the output could be more verbose by setting an argument verbose to true. There is currently no way to get a progress when running iterations in the 1000s.

ococrook commented 2 months ago

Thanks! If you're running in parrallel mode on a windows machine that won't be possible because of the way parrellelism work in windows but if you're on a mac or ubuntu it should already output a progress bar

melonora commented 2 months ago

ah ok, thanks! Yeah personally I am using a windows machine, though my lab member uses a mac and she didn't get to see a progress bar. I will double check with her. From my understanding with BPPARAM the only option for running parallel code is to specify BPPARAM=SnowParam ) or specify DoparParam. Do you have a recommendation of what would be more beneficial to use with bandle? I am not certain whether it is good to run a parellelisation without shared memory here.

melonora commented 2 months ago

also thanks for your reply!:)