Define additional features for developement (discussion)

[broncio123]

We need to think about additional features for the package @ococrook

As a first approach, we can start by asking what features hdxstats could have that are implemented by other HDX analysis packages

• DynaX https://www.waters.com/webassets/cms/library/docs/720005145en.pdf
• HDExaminer https://www.leaptec.com/products/hdexaminer-from-sierra-analytics

Also, I wonder if we it's worth considering some of the recommendations described in this nature article https://www.nature.com/articles/s41592-019-0459-y#Sec3

[ococrook]

priority:

• [ ] 3D structure viewer: https://github.com/ococrook/hdxstats/issues/9#issue-1119554155.
• [ ] woods plots, https://github.com/jpquast/protti/blob/master/R/woods_plot.R, https://hadexversum.github.io/HaDeX/reference/woods_plot.html
• [ ] contact maps: https://github.com/jpquast/protti/blob/master/R/create_structure_contact_map.R

wish list

• [ ] Combine information from multiple charge states of the same peptide
• [ ] Length-bias statistics