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ococrook / hdxstats

hdxstats: An R-package for statistical analysis of hydrogen deuterium exchange mass-spectrometry data.
Apache License 2.0
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AAString + Start & End residues #26

Closed nlgittens closed 1 year ago

nlgittens commented 2 years ago

Would it be possible to concatenate AA strings with the Start and End peptide sequences? As I think when analysing data, my brain more easily recollects the important residue numbers rather than the actual sequence, and I think that other people will also be feel similarly. I think carrying forwards residue numbers into the final out@results table will also be help orient users (as below).

image

ococrook commented 1 year ago

@broncio123 can you let me know when you've editted the code such that the start and end of the amino acid are in the QFeatures object. This can then easily be added to these plots.

broncio123 commented 1 year ago

@broncio123 can you let me know when you've editted the code such that the start and end of the amino acid are in the QFeatures object. This can then easily be added to these plots.

It's already been done, here https://github.com/ococrook/hdxstats/blob/5ea787bbc09c18cde359ce5ef5a739b6c6d84af6/R/hdxstat-utils.R#L411 branch app_v2