Add routines for normalisation by time intercept and 'undeuterated' peptide mass into normalisehdx

[broncio123]

Function to be modified https://github.com/ococrook/hdxstats/blob/12bd49179a8875746d1221700b9f278e858dee44/R/hdxstat-utils.R#L33

• Normalise by intercept: To subtract the Deu Uptake value of the first timepoint from subsequent timepoints for a peptide, for single experimental conditions/states. Example

• Normalise by undeutereated mass of a peptide: Across all experimental conditions/states, for a peptide. Example

Is this something you already have a modified routine for, @ococrook ? I guess for the second case, the line from the vignette can be taken.

[ococrook]

This is done on the v2 branch?

[broncio123]

This is done on the v2 branch?

Yes, these routines are now part of normalisehdx, here https://github.com/ococrook/hdxstats/blob/77ab9c21681c9bce3c1721e9a9a5f3852dabd80a/R/hdxstat-utils.R#L62-L131

I'll close this issue as the new features have been already implemented.