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ococrook / hdxstats

hdxstats: An R-package for statistical analysis of hydrogen deuterium exchange mass-spectrometry data.
Apache License 2.0
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processFunctional error #36

Closed nlgittens closed 1 year ago

nlgittens commented 2 years ago

As per our meeting this morning, these are the error messages and warnings that I have received. No "out" object is created. I am adding in file to our fileshare today.

> out <- processFunctional(object = hdxstats_tableqDF, params = res) Error in if (m == 0) { : missing value where TRUE/FALSE needed In addition: There were 50 or more warnings (use warnings() to see the first 50)

> warnings() Warning messages: 1: In pf(q = Fstat, df1 = d1, df2 = d2, lower.tail = FALSE) : NaNs produced 2: In pf(q = Fstat, df1 = d1, df2 = d2, lower.tail = FALSE) : NaNs produced 3: In pf(q = Fstat, df1 = d1, df2 = d2, lower.tail = FALSE) : NaNs produced 4: In pf(q = Fstat, df1 = d1, df2 = d2, lower.tail = FALSE) : NaNs produced 5: In pf(q = Fstat, df1 = d1, df2 = d2, lower.tail = FALSE) : NaNs produced ...etc

ococrook commented 1 year ago

Hi Nathan

The script you sent works for me - could you double check the error ? Perhaps the ELN .csv isn't correct?

nlgittens commented 1 year ago

Hmm... not sure what's going on, I retried it but seemed to work okay and haven't been able to reproduce the error. I'll close this for now and re-open if I an work out the cause.