Installation on batch systems (eg. using Torque/PBS)
configure with --with-batch (see PETSc Installation FAQ)
make as instructed in the last lines of configuration output
run conftest<...> binary on compute node (see below how to setup a PBS job)
run Python reconfigure<...> script produced by previous step on master node (i.e. directly, without submitting it to the queueing system)
Setting up Torque/PBS batch jobs
(qsub for submitting batch jobs, qstat for viewing job queue and status) :
qsub test.sh where in the bash script we specify the PBS commands as comments:
#!/bin/sh#PBS -N test # job name
#PBS -l nodes=2:ppn=1 # # compute nodes and processes per node
#PBS -e test.err # name of error output file
#PBS -o test.log # name of output log file
cd $PBS_O_WORKDIR # move working directory to the one containing this file
mpirun <mpi_ready_binary>
Installation on batch systems (eg. using Torque/PBS)
configurewith--with-batch(see PETSc Installation FAQ)makeas instructed in the last lines of configuration outputconftest<...>binary on compute node (see below how to setup a PBS job)reconfigure<...>script produced by previous step on master node (i.e. directly, without submitting it to the queueing system)Setting up Torque/PBS batch jobs (
qsubfor submitting batch jobs,qstatfor viewing job queue and status) :qsub test.shwhere in the bash script we specify the PBS commands as comments:#!/bin/sh#PBS -N test# job name#PBS -l nodes=2:ppn=1# # compute nodes and processes per node#PBS -e test.err# name of error output file#PBS -o test.log# name of output log filecd $PBS_O_WORKDIR# move working directory to the one containing this filempirun <mpi_ready_binary>┆Issue is synchronized with this Asana task