Broken CIGAR string when flag = 272 (revcomp & secondary)

ocxtal / minialign

[IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long reads

MIT License

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Closed ocxtal closed 7 years ago

ocxtal commented 7 years ago

Output CIGAR string (or mapping position or something) is wrong on reverse-complemented and secondary marked alignment records.

ocxtal commented 7 years ago

Fixed on commit b23ad95 (tag: minialign-0.4.1).