Regarding the setup on renkulab, I'm not exactly sure on how to handle the following:
How do I have to specify that I want to use my custom jupyter-kernel for the notebooks? I want to use a custom one because Karabo currently relies on Python3.9 & conda, which needs a dedicated venv with it's jupyter-kernel.
Does reproducibility as described in the dev-guide also include the setup of the venv? If yes (probably depends on how frequent a container is built), then it probably makes sense to install the packages from pip freeze or conda list -e?
Regarding the setup on renkulab, I'm not exactly sure on how to handle the following:
pip freezeorconda list -e?