Open leedchou opened 6 months ago
Hi,
There's no ordering. It's an AND of those. If a chunk does not respect any of them, it'll be sliced (except maybe for borders or other corner cases).
Best, Simone
Thank you @srubinacci very much for your quick response. I really appreciate your time.
After further reflection on your paper and running GLIMPSE2, I have a few additional questions that I would like to ask. Firstly, regarding the 3 window parameters mentioned previously, I was wondering the role and purpose of genetic map
in chunk
step. Could you please elaborate on how and which information in genetic map
was used when doing chunk?
Moreover, I am still slightly confused about the buffer-related parameters, e.g. --buffer-cm
, what does it mean? What's the difference between buffer
and window
?
Lastly, the output results of chunk
contain 8 columns of information in each line, however, I am not aware of what these information represent. Could you possibly provide a further explanation about the 8 columns to help me better understand it?
Thank you again for your time in addressing my queries, your insights are invaluable to me.
Best regards, Leed
Hi, all
There are 3 window parameters, they are
--window-cm
、--window-mb
、--window-count
. I am wondering what's the priority among them.Thank you.