Specify index associated with BAM/CRAM file

odelaneau / GLIMPSE

Low Coverage Calling of Genotypes

MIT License

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Specify index associated with BAM/CRAM file #208

Closed kachulis closed 7 months ago

kachulis commented 7 months ago

Adds option to specify index files for BAM/CRAM, in case those index files are not located directly next to BAM/CRAM files.

kachulis commented 7 months ago

on further investigation, I've realized that this can also be achieved using the htslib ##idx## notation. So I don't think this actually adds any functionality.