Glimpse concordance gzip output

odelaneau / GLIMPSE

Low Coverage Calling of Genotypes

MIT License

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Glimpse concordance gzip output #210

Closed LouisLeNezet closed 4 months ago

LouisLeNezet commented 6 months ago

Hi !

I'm currently writting the code to support the files generated by GLIMPSE2_concordance by MultiQC. Unfortunately MultiQC doesn't allow .txt.gz extension and therefore before using it users might need to decompress the files before running MultiQC, which is not ideal. Is there a reason why you work with compressed files and would it be possible to add an option to output uncompressed one ? Thanks !

LouisLeNezet commented 4 months ago

In the end, MultiQC tool has allowed to use compressed files. Glimpse2 concordance output graphs are now available with MultiQC 😉