ERROR compiling GLIMPSE2 static execution

[leedchou]

Hi all,

I encountered this error when building a docker image that compiles static_exe:

g++: error: /home/srubinac/git/htslib_minimal/libhts.a: No such file or directory

Have you ever build an image that compiles GLIMPSE2_static successfully?

Best

[leedchou]

I modified the path of htslib:

static_exe: HTSSRC=/usr/local
static_exe: HTSLIB_INC=$(HTSSRC)/include/htslib
static_exe: HTSLIB_LIB=$(HTSSRC)/lib/libhts.a

A lot of errors encountered like:

/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libcurl.a(libcurl_la-openssl.o): in function `Curl_ossl_session_free':
(.text+0x2f5): undefined reference to `SSL_SESSION_free'
/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libcurl.a(libcurl_la-krb5.o): in function `krb5_decode':
(.text+0x7e): undefined reference to `gss_unwrap'
/usr/bin/ld: (.text+0xad): undefined reference to `gss_release_buffer'
/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libcurl.a(libcurl_la-krb5.o): in function `krb5_encode':
(.text+0x139): undefined reference to `gss_wrap'
/usr/bin/ld: (.text+0x17f): undefined reference to `gss_release_buffer'
/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libcurl.a(libcurl_la-krb5.o): in function `krb5_auth':
(.text+0x32a): undefined reference to `GSS_C_NT_HOSTBASED_SERVICE'
/usr/bin/ld: (.text+0x335): undefined reference to `gss_import_name'
/usr/bin/ld: (.text+0x356): undefined reference to `gss_release_name'
/usr/bin/ld: (.text+0x3f6): undefined reference to `gss_display_name'
/usr/bin/ld: (.text+0x421): undefined reference to `gss_release_buffer'
/usr/bin/ld: (.text+0x47c): undefined reference to `gss_release_buffer'
/usr/bin/ld: (.text+0x591): undefined reference to `gss_release_buffer'
/usr/bin/ld: (.text+0x60e): undefined reference to `gss_release_name'
/usr/bin/ld: (.text+0x619): undefined reference to `gss_release_buffer'
/usr/bin/ld: (.text+0x63c): undefined reference to `gss_release_name'
/usr/bin/ld: (.text+0x647): undefined reference to `gss_release_buffer'
/usr/bin/ld: (.text+0x775): undefined reference to `gss_release_name'
/usr/bin/ld: (.text+0x780): undefined reference to `gss_release_buffer'

[leedchou]

Figured out. I disabled libcurl when compiling htslib and glimpse, and that worked for me. So I am gonna close it.