Segmentation fault (core dumped)

Hi,

I tried using SHAPEIT4, but I got "Segmentation fault (core dumped)" error!

The belows are my command and log.

**shapeit4 --input /home/test.vcf.gz --map /home/genetic_maps.b38/chr11.b38.gmap.gz --region 11 --output /home/phased_test.vcf.gz --log phased_test.log --thread 16

SHAPEIT

Author : Olivier DELANEAU, University of Lausanne
Contact : olivier.delaneau@gmail.com
Version : 4.1.3
Run date : 30/11/2020 - 13:26:10

Files:

Input VCF : [/home/test.vcf.gz]
Genetic Map : [/home/genetic_maps.b38/chr11.b38.gmap.gz]
Output VCF : [/home/phased_test.vcf.gz]
Output LOG : [phased_test.log]

Parameters:

Seed : 15052011
Threads : 16 threads
MCMC : 15 iterations [5b + 1p + 1b + 1p + 1b + 1p + 5m]
PBWT : Depth of PBWT neighbours to condition on: 4
PBWT : Store indexes at variants [MAC>=2 / MDR<=0.5 / Dist=0.02 cM]
HMM : K is variable / min W is 2.50cM / Ne is 15000
HMM : Recombination rates given by genetic map
HMM : AVX2 optimization active
IBD2 : length>=3.00cM [N>=150 / MAF>=0.010 / MDR<=0.500]

Initialization:

VCF/BCF scanning [N=1 / L=1425027 / Reg=chr11] (8.34s)
VCF/BCF parsing [Hom=86.0% / Het=8.3% / Mis=5.7%] (9.01s)
GMAP parsing [n=168609] (0.08s)
cM interpolation [s=158292 / i=1266735] (0.07s) Segmentation fault (core dumped)**

The "Segmentation fault (core dumped)" error is quite common error. So I don't know hot to solve this problem. Please let me know if you have solutions.

Thank you.

odelaneau / shapeit4

Segmentation fault (core dumped) #41