Question in test folder hapmap for b37 chr20

odelaneau / shapeit4

Segmented HAPlotype Estimation and Imputation Tool

MIT License

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Question in test folder hapmap for b37 chr20 #43

Open BJWiley233 opened 3 years ago

BJWiley233 commented 3 years ago

Hi, I noticed the file in test folder chr20.b37.gmap.gz is the same as that supplied by beagle. But this is different that what you get from Eagle download here with name genetic_map_hg19.txt.gz. Would anyone know where to understand these different positions and cMs?

odelaneau commented 3 years ago

Hi,

I tested multiple versions of the genetic maps and it has no real impact. You can use the version you want as soon as it is correctly formatted.

Best,

Olivier.

BJWiley233 commented 3 years ago

Ok thank you!