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odelaneau / shapeit4

Segmented HAPlotype Estimation and Imputation Tool
MIT License
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Compilation Issue GCC 5.3.1 #59

Open denisemauldin opened 3 years ago

denisemauldin commented 3 years ago

Hello,

We're compiling with GCC 5.3.1 as that's the latest version we have available. I'm using HTSLib 1.12 and boost 1.76.0

g++ -std=c++11 -O3 -mavx2 -mfma  -c src/main.cpp -o obj/main.o -Isrc -I/local/src/htslib-1.3.2/htslib -I/local/include/boost
In file included from src/phaser/phaser_header.h:29:0,
                 from src/main.cpp:23:
src/models/haplotype_segment_single.h: In member function ‘bool haplotype_segment_single::TRANS_DIP_MULT()’:
src/models/haplotype_segment_single.h:556:25: error: call of overloaded ‘isnan(double&)’ is ambiguous
  return (isnan(sumDProbs) || isinf(sumDProbs) || sumDProbs < numeric_limits<double>::min());
                         ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/usr/include/bits/mathcalls.h:235:1: note: candidate: int isnan(double)
 __MATHDECL_1 (int,isnan,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:634:3: note: candidate: constexpr bool std::isnan(long double)
   isnan(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:630:3: note: candidate: constexpr bool std::isnan(double)
   isnan(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:626:3: note: candidate: constexpr bool std::isnan(float)
   isnan(float __x)
   ^
In file included from src/phaser/phaser_header.h:29:0,
                 from src/main.cpp:23:
src/models/haplotype_segment_single.h:556:45: error: call of overloaded ‘isinf(double&)’ is ambiguous
  return (isnan(sumDProbs) || isinf(sumDProbs) || sumDProbs < numeric_limits<double>::min());
                                             ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/usr/include/bits/mathcalls.h:202:1: note: candidate: int isinf(double)
 __MATHDECL_1 (int,isinf,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:614:3: note: candidate: constexpr bool std::isinf(long double)
   isinf(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:610:3: note: candidate: constexpr bool std::isinf(double)
   isinf(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:606:3: note: candidate: constexpr bool std::isinf(float)
   isinf(float __x)
   ^
In file included from src/phaser/phaser_header.h:29:0,
                 from src/main.cpp:23:
src/models/haplotype_segment_single.h: In member function ‘bool haplotype_segment_single::TRANS_DIP_ADD()’:
src/models/haplotype_segment_single.h:574:25: error: call of overloaded ‘isnan(double&)’ is ambiguous
  return (isnan(sumDProbs) || isinf(sumDProbs) || sumDProbs < numeric_limits<double>::min());
                         ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/usr/include/bits/mathcalls.h:235:1: note: candidate: int isnan(double)
 __MATHDECL_1 (int,isnan,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:634:3: note: candidate: constexpr bool std::isnan(long double)
   isnan(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:630:3: note: candidate: constexpr bool std::isnan(double)
   isnan(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:626:3: note: candidate: constexpr bool std::isnan(float)
   isnan(float __x)
   ^
In file included from src/phaser/phaser_header.h:29:0,
                 from src/main.cpp:23:
src/models/haplotype_segment_single.h:574:45: error: call of overloaded ‘isinf(double&)’ is ambiguous
  return (isnan(sumDProbs) || isinf(sumDProbs) || sumDProbs < numeric_limits<double>::min());
                                             ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/usr/include/bits/mathcalls.h:202:1: note: candidate: int isinf(double)
 __MATHDECL_1 (int,isinf,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:614:3: note: candidate: constexpr bool std::isinf(long double)
   isinf(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:610:3: note: candidate: constexpr bool std::isinf(double)
   isinf(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:606:3: note: candidate: constexpr bool std::isinf(float)
   isinf(float __x)
   ^
In file included from src/phaser/phaser_header.h:30:0,
                 from src/main.cpp:23:
src/models/haplotype_segment_double.h: In member function ‘bool haplotype_segment_double::TRANS_HAP()’:
src/models/haplotype_segment_double.h:279:25: error: call of overloaded ‘isnan(double&)’ is ambiguous
  return (isnan(sumHProbs) || isinf(sumHProbs) || sumHProbs < numeric_limits<double>::min());
                         ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/usr/include/bits/mathcalls.h:235:1: note: candidate: int isnan(double)
 __MATHDECL_1 (int,isnan,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:634:3: note: candidate: constexpr bool std::isnan(long double)
   isnan(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:630:3: note: candidate: constexpr bool std::isnan(double)
   isnan(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:626:3: note: candidate: constexpr bool std::isnan(float)
   isnan(float __x)
   ^
In file included from src/phaser/phaser_header.h:30:0,
                 from src/main.cpp:23:
src/models/haplotype_segment_double.h:279:45: error: call of overloaded ‘isinf(double&)’ is ambiguous
  return (isnan(sumHProbs) || isinf(sumHProbs) || sumHProbs < numeric_limits<double>::min());
                                             ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/usr/include/bits/mathcalls.h:202:1: note: candidate: int isinf(double)
 __MATHDECL_1 (int,isinf,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:614:3: note: candidate: constexpr bool std::isinf(long double)
   isinf(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:610:3: note: candidate: constexpr bool std::isinf(double)
   isinf(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:606:3: note: candidate: constexpr bool std::isinf(float)
   isinf(float __x)
   ^
In file included from src/phaser/phaser_header.h:30:0,
                 from src/main.cpp:23:
src/models/haplotype_segment_double.h: In member function ‘bool haplotype_segment_double::TRANS_DIP_MULT()’:
src/models/haplotype_segment_double.h:297:25: error: call of overloaded ‘isnan(double&)’ is ambiguous
  return (isnan(sumDProbs) || isinf(sumDProbs) || sumDProbs < numeric_limits<double>::min());
                         ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/usr/include/bits/mathcalls.h:235:1: note: candidate: int isnan(double)
 __MATHDECL_1 (int,isnan,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:634:3: note: candidate: constexpr bool std::isnan(long double)
   isnan(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:630:3: note: candidate: constexpr bool std::isnan(double)
   isnan(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:626:3: note: candidate: constexpr bool std::isnan(float)
   isnan(float __x)
   ^
In file included from src/phaser/phaser_header.h:30:0,
                 from src/main.cpp:23:
src/models/haplotype_segment_double.h:297:45: error: call of overloaded ‘isinf(double&)’ is ambiguous
  return (isnan(sumDProbs) || isinf(sumDProbs) || sumDProbs < numeric_limits<double>::min());
                                             ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/usr/include/bits/mathcalls.h:202:1: note: candidate: int isinf(double)
 __MATHDECL_1 (int,isinf,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:614:3: note: candidate: constexpr bool std::isinf(long double)
   isinf(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:610:3: note: candidate: constexpr bool std::isinf(double)
   isinf(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:606:3: note: candidate: constexpr bool std::isinf(float)
   isinf(float __x)
   ^
In file included from src/phaser/phaser_header.h:30:0,
                 from src/main.cpp:23:
src/models/haplotype_segment_double.h: In member function ‘bool haplotype_segment_double::TRANS_DIP_ADD()’:
src/models/haplotype_segment_double.h:315:25: error: call of overloaded ‘isnan(double&)’ is ambiguous
  return (isnan(sumDProbs) || isinf(sumDProbs) || sumDProbs < numeric_limits<double>::min());
                         ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/usr/include/bits/mathcalls.h:235:1: note: candidate: int isnan(double)
 __MATHDECL_1 (int,isnan,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:634:3: note: candidate: constexpr bool std::isnan(long double)
   isnan(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:630:3: note: candidate: constexpr bool std::isnan(double)
   isnan(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:626:3: note: candidate: constexpr bool std::isnan(float)
   isnan(float __x)
   ^
In file included from src/phaser/phaser_header.h:30:0,
                 from src/main.cpp:23:
src/models/haplotype_segment_double.h:315:45: error: call of overloaded ‘isinf(double&)’ is ambiguous
  return (isnan(sumDProbs) || isinf(sumDProbs) || sumDProbs < numeric_limits<double>::min());
                                             ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/usr/include/bits/mathcalls.h:202:1: note: candidate: int isinf(double)
 __MATHDECL_1 (int,isinf,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/phaser/phaser_header.h:27,
                 from src/main.cpp:23:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:614:3: note: candidate: constexpr bool std::isinf(long double)
   isinf(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:610:3: note: candidate: constexpr bool std::isinf(double)
   isinf(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:606:3: note: candidate: constexpr bool std::isinf(float)
   isinf(float __x)
   ^
make: *** [obj/main.o] Error 1

I tried editing src/models/haplotype_segment_single.h src/models/haplotype_segment_double.h src/objects/compute_job.cpp

to specify either std::isnan or ::isnan to resolve the error: call of overloaded ‘isnan(double&)’ is ambiguous error. or to specify either std::isinf or ::isinf to resolve the error: call of overloaded ‘isinf(double&)’ is ambiguous error.

Editing this will result in no errors while compiling, but when trying to use the shapeit4.2 binary that is generated, it exits with an Illegal instruction error. How can I resolve this error?

denisemauldin commented 3 years ago

This is the error that is thrown after the haplotype*.h files are edited, but before the compute_job.cpp is edited:

src/objects/compute_job.cpp: In member function ‘void compute_job::maskingTransitions(unsigned int, double)’:
src/objects/compute_job.cpp:233:58: error: call of overloaded ‘isnan(double&)’ is ambiguous
   if (sumT > numeric_limits<double>::min() && !isnan(sumT))
                                                          ^
In file included from /usr/include/features.h:375:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/os_defines.h:39,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/x86_64-redhat-linux/bits/c++config.h:2255,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algobase.h:59,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/vector:60,
                 from src/utils/otools.h:26,
                 from src/objects/compute_job.h:25,
                 from src/objects/compute_job.cpp:22:
/usr/include/bits/mathcalls.h:235:1: note: candidate: int isnan(double)
 __MATHDECL_1 (int,isnan,, (_Mdouble_ __value)) __attribute__ ((__const__));
 ^
In file included from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/random:38:0,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/bits/stl_algo.h:66,
                 from /opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/algorithm:62,
                 from src/utils/otools.h:35,
                 from src/objects/compute_job.h:25,
                 from src/objects/compute_job.cpp:22:
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:634:3: note: candidate: constexpr bool std::isnan(long double)
   isnan(long double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:630:3: note: candidate: constexpr bool std::isnan(double)
   isnan(double __x)
   ^
/opt/rh/devtoolset-4/root/usr/include/c++/5.3.1/cmath:626:3: note: candidate: constexpr bool std::isnan(float)
   isnan(float __x)
   ^
make: *** [obj/compute_job.o] Error 1
odelaneau commented 2 years ago

I'd try to compile the code with a newer version of g++, version 5 is a bit old now (2015).