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odelaneau / shapeit5

Segmented HAPlotype Estimation and Imputation Tool
https://odelaneau.github.io/shapeit5/
MIT License
61 stars 9 forks source link

can pedigree information be fed into SHAPEIT5? #10

Closed cdquinto closed 1 year ago

JosephLalli commented 1 year ago

Yes - the --pedigree options allows for the consideration of pedigrees of format ChildID\tFatherID\tMotherID

See input files section of SHAPEIT5_common documentation: https://odelaneau.github.io/shapeit5/docs/documentation/phase_common/

cdquinto commented 1 year ago

Great, thanks!