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odelaneau / shapeit5

Segmented HAPlotype Estimation and Imputation Tool
https://odelaneau.github.io/shapeit5/
MIT License
56 stars 9 forks source link

vcf_to_sparse.py location for compound het detection #103

Open Naughtoncolin opened 1 month ago

Naughtoncolin commented 1 month ago

I see in the script "DetermineCH.py" that a sparse VCF is required. I also see a reference to "vcf_to_sparse.py" in the arg parse portion of the script. Where can I find this script to convert a vcf to a svcf that is compatible with "DetermineCH.py"?