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odelaneau / shapeit5

Segmented HAPlotype Estimation and Imputation Tool
https://odelaneau.github.io/shapeit5/
MIT License
61 stars 9 forks source link

Issue with the start #21

Closed masterzhen119 closed 1 year ago

masterzhen119 commented 1 year ago

Hello. I am trying to mimic the process. However, there are a lot of steps to build from source code. If I choose the static version, should I just replace the command like ../phase_common/bin/SHAPEIT5_phase_common --input 10k/msprime.nodup.bcf --filter-maf 0.001 --output 10k/msprime.common.phased.bcf --region 1 --thread 8 bcftools index 10k/msprime.common.phased.bcf --threads 8 to ../phase_common_static --input 10k/msprime.nodup.bcf --filter-maf 0.001 --output 10k/msprime.common.phased.bcf --region 1 --thread 8 bcftools index 10k/msprime.common.phased.bcf --threads 8. Or what should I do make the file run?

odelaneau commented 1 year ago

Yes.

odelaneau commented 1 year ago

Yes, just use the staic binaries. No need to compile.