I am getting an issue where my unphased vcf is in the current directory, but shapeit is saying it's not there: ERROR: Opening [NC_053450.1.vcf.gz]: unknown error
[E::hts_open_format] Failed to open file "NC_053450.1.vcf.gz" : No such file or directory
I am using the following command: docker run shapeit5_2023-05-05_d6ce1e2 phase_common_static --input NC_053450.1.vcf.gz --region NC_053450.1 -O NC_053450.1.phased
I have been unable to compile from source or to use the precompiled static binaries.
Hello,
I am getting an issue where my unphased vcf is in the current directory, but shapeit is saying it's not there: ERROR: Opening [NC_053450.1.vcf.gz]: unknown error [E::hts_open_format] Failed to open file "NC_053450.1.vcf.gz" : No such file or directory
I am using the following command: docker run shapeit5_2023-05-05_d6ce1e2 phase_common_static --input NC_053450.1.vcf.gz --region NC_053450.1 -O NC_053450.1.phased
I have been unable to compile from source or to use the precompiled static binaries.
Please advise on what I should do, thank you.