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odelaneau / shapeit5

Segmented HAPlotype Estimation and Imputation Tool
https://odelaneau.github.io/shapeit5/
MIT License
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Reference files #47

Closed Anahit19 closed 1 year ago

Anahit19 commented 1 year ago

Hi,

I downloaded the reference dataset from 1000G [GRCh37]:

https://mathgen.stats.ox.ac.uk/impute/1000GP_Phase3.html

However, while running shapeit5 I got this error: Opening 1000GP_Phase3_chr22.hap.gz: file format not supported by HTSlib.

Could you please help with this issue? Thanks! Anahit