Closed klmartinez closed 1 year ago
Hi,
It's likely a problem in your map? The line:
* GMAP parsing [n=0] (0.00s)
Indicates that there are zero records found int the map file. This should not be the case.
Can you check if the path is correctly specified?
Hope this helps.
Simone
Hi Simone,
Thank you for your reply. I was making a very silly mistake and instead of actually pulling the map file you offer under resources, I was pulling the path to the HTML site that hosts the raw data. This issue has now been resolved.
Many thanks, Kiana
Hello,
I am using the static binaries to run phase_common on a ~1 million bp locus on chromosome 9. I am using a cloud environment with 16 CPUs and 104 GB RAM.
When I run phase_common (
./phase_common_static --input mt_chr9_serology_subset_locus_srwgs_v7.bcf --filter-maf 0.001 --region chr9 --map chr9.b38.gmap.gz --output tmp/target.scaffold.bcf --thread 16
), I get the following output and error:Any suggestions on how to resolve this issue would be greatly appreciated.