phase_common: command not found

[aissushan]

Hi everyone, I tried running the documentation part of SHAPEIT5 but unfortunately when I run the phase common code, it says command not found: phase_common --input array/target.unrelated.bcf --region 1 --map info/chr1.gmap.gz --output target.phased.bcf --thread 8 phase_common: command not found

I tried running these lines of codes, but still error, although the phase common package is listed when I run ls -a:

aissu98@asvryxx:~/shapeit5/test$ sudo apt install phase_common Reading package lists... Done Building dependency tree... Done Reading state information... Done E: Unable to locate package phase_common aissu98@asvryxx:~/shapeit5/test$ cd ../ aissu98@asvryxx:~/shapeit5$ ls -a . docker LICENSE phase_rare .settings tasks .. docs ligate README.md simulate test archive .git makefile resources static_bins versions common .gitmodules phase_common scripts switch xcftools

[srubinacci]

You first need to download the executable here: https://github.com/odelaneau/shapeit5/releases/tag/v5.1.1 Then, simply use "./phase_common_static" using the file you have just downloaded.

[aissushan]

You first need to download the executable here: https://github.com/odelaneau/shapeit5/releases/tag/v5.1.1 Then, simply use "./phase_common_static" using the file you have just downloaded.

Hi, thank you for the suggestion. I have tried doing it but it is still unsuccessful. I am currently running the UBUNTU on a virtual machine in my MacOS. Could that be the reason?

[pettyalex]

@aissushan Are you on an Apple Silicon Mac? M1 or M2 processor? shapeit 5 only supports Intel or AMD processors.

[aissushan]

@pettyalex yeap I am on M1 processor. I see, okay thank you. I will try to run it on a different computer