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odissei-lifecourse / life-sequencing-dutch

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Update Virtual Env with GraphSAGE Libraries #108

Open dakota0064 opened 3 weeks ago

dakota0064 commented 3 weeks ago

GraphSAGE requires neighbor sampling, which is provided by either torch-sparse or (optimally) pyg-lib. It also throws a warning for missing torch-scatter but I think that might be optional for the functionality we need.

However, these libraries rely on CUDA and have historically raised conflicts with other versions of things we need when I tried to install them on Snellius. I have raised the issue with SURF - if they can find a good solution, we can either attempt to recreate it on the OSSC ourselves or export the virtual environment again.

f-hafner commented 3 weeks ago

@dakota0064 , can you write which version of GraphSAGE (and if any, which other packages), you wanted to install for this?