oesteban / RegSeg

RegSeg is a simultaneous segmentation and registration method that uses active contours without edges (ACWE) extracted from structural images. The contours evolve through a free-form deformation field supported by the B-spline basis to optimally map the contours onto the data in the target space.
MIT License
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Check that mask is not flipped in X #194

Closed oesteban closed 9 years ago

oesteban commented 9 years ago

In the registration pipeline with real brains, there seems to be a problem with the brain mask. Looks like a flip in X is happening.

There are two potential reasons for this: