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Export as TSF: error in Fiji #1

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. INstall ThunderSTORM in the latest Fiji
2. Run an analysis
3. Export results as TSF

What is the expected output? What do you see instead?
I expect a .tsf file to be created and saved. Instead I get this error:

There was a problem with the class org.apache.commons.io.IOUtils which can be 
found here:
/Users/christo/Travail/Labo/Processing/Fiji_current/Fiji.app/jars/batik.jar
/Users/christo/Travail/Labo/Processing/Fiji_current/Fiji.app/plugins/Thunder_STO
RM.jar

WARNING: multiple locations found!
java.lang.NoSuchMethodError: 
org.apache.commons.io.IOUtils.closeQuietly(Ljava/io/Closeable;)V
    at cz.cuni.lf1.lge.ThunderSTORM.ImportExport.TSFImportExport.importFromFile(TSFImportExport.java:179)
    at cz.cuni.lf1.lge.ThunderSTORM.ImportExportPlugIn.importFromFile(ImportExportPlugIn.java:268)
    at cz.cuni.lf1.lge.ThunderSTORM.ImportExportPlugIn.runImport(ImportExportPlugIn.java:235)
    at cz.cuni.lf1.lge.ThunderSTORM.ImportExportPlugIn.run(ImportExportPlugIn.java:102)
    at ij.IJ.runUserPlugIn(IJ.java:199)
    at ij.IJ.runPlugIn(IJ.java:163)
    at ij.Executer.runCommand(Executer.java:131)
    at ij.Executer.run(Executer.java:64)
    at java.lang.Thread.run(Thread.java:695)
Could not find method 
org.apache.commons.io.IOUtils.closeQuietly(Ljava/io/Closeable;)V
(See Log for details)

Notably a .tsf file is indeed created but I'm not sure it is not corrupted. If 
I try to re-import it, I get the same error and it is not imported in 
ThunderSTORM.

What version of the product are you using? On what operating system?
I'm using ThunderSTORM 1.1 in Fiji (ImageJ 1.48q), Java 1.6.0_65 (64b) on OSX 
10.9.1

Please provide any additional information below.
Thanks for this great tool!
Christophe Leterrier, Marseille

Original issue reported on code.google.com by lechrist...@gmail.com on 11 Feb 2014 at 3:48

GoogleCodeExporter commented 9 years ago 
Thanks for feedback.
It should be ok in development version dev-2014-02-19-b1. Fixed in commit 
4061dbb27aa1.

Original comment by vmodrose...@gmail.com on 19 Feb 2014 at 3:11