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ofgulban / segmentator

3D MRI data exploration and segmentation tool.
https://github.com/ofgulban/segmentator/wiki
BSD 3-Clause "New" or "Revised" License
74 stars 13 forks source link

Exclude zero voxels by default #63

Closed ofgulban closed 6 years ago

ofgulban commented 6 years ago

Provide an interface option to include zero voxels in the image from histogram and masking process, otherwise they will be excluded.

This is done to account for common brain extraction step.

ofgulban commented 6 years ago

New flag is added to the interface: --include_zeros