Open Secretloong opened 5 years ago
Thank you, Gotoh. Very helpful to understand Spaln.
I made a mistake in 1. Actually, Expected_Max_Gene_Size ~= Const * sqrt(Genome_Size), where Const is empirically determined to be 36.
I made a mistake in 1. Actually, Expected_Max_Gene_Size ~= Const * sqrt(Genome_Size), where Const is empirically determined to be 36.
It makes sense. So block size~= sqrt(Genome_Size), Expected_Max_Gene_Size ~= Const * sqrt(Genome_Size), where Const is empirically determined to be 36.
Yes, that's right.
Hi Gotoh,
Recently, I'm trying to replace genewise with your spaln. I found spaln could get more expected gene structure as query protein. It seems great! To apply in non-model and non-reference genome, I think much more specific parameter would be better. There are several questions I need your help:
Thank you very much! And looking forward your responses ASAP.