Extending DIPY Visualization and workflows (command line) framework

[skoudoro]

Extending DIPY Vizualisation or workflows framework

Project Description

DIPY is the largest community-based open-source software project and it implements many methods in computational neuroanatomy, with an emphasis on methods for the analysis of diffusion MRI (dMRI) data. DIPY offers a new system of command-line interfaces that ease the use of the Python API implemented for clinician/neuroimagers. The goal is to add new functionalities and simplify the command line creation. The second project is based on FURY, a scientific visualization library, born from a DIPY spin-off. The goal is to add some widget and a function to simplify Atlas visualization.

Skills required to participate

Everybody is welcomed! from python Beginner to expert! if you are interested in :

• improving your understanding or extending of DIPY visualization, join us!
• extending DIPY command line framework, join us!

Integration

Neuroimagers and computational scientists may be able to contribute to either part of the project. more details below:

Workflows Project:

• Create a worflows from a decorator instead of a Class.
• Create New DIPY Workflow (command line)
• For beginner, you will be able to create and contribute your own command line on DIPY
• Increase documentation

Visualization Project:

• Visualization dynamic Atlas easily (medium)
• Dynamic Mosaic visualization (medium)
• Create a new widget (Combobox) (medium)
• Create new brain effect with shader (advanced user)
• Increase documentation

Preparation material

• DIPY workflows intro: http://nipy.org/dipy/examples_built/workflow_creation.html#example-workflow-creation
• DIPY visualization / FURY -> https://fury.gl or http://nipy.org/dipy/examples_built/viz_ui.html#example-viz-ui or http://nipy.org/dipy/examples_built/viz_advanced.html#example-viz-advanced

Link to your GitHub repo

• DIPY: https://github.com/nipy/dipy (pip install dipy)
• FURY: https://github.com/fury-gl/fury (pip install fury)

Communication

https://gitter.im/nipy/dipy

[josepman]

Hey, where are you based, guys? I would like to visit you :)

[skoudoro]

we are at central mecano. Second floor, First table!

[skoudoro]

otherwise, contact me with mattermost via @skab12