Physiological signal classification challenge

[drombas]

Project info

Title: Physiological signal classification challenge

Project lead: David Romero (@drombas) and Stefano Moia (@smoia)

Timezone Brussels UTC+2

Description: Phys2bids is a python3 library to format physiological files in BIDS. One of the current development goals is to make phys2bids smarter by implementing an automatic signal classificator. Ideally, given a physiological signal as input, phys2bids should be able to determine the type of the signal (cardiac, respiratory …).

To move forward, this project is structured as a challenge: we provide time-series data of 4 kinds of physiological signals (cardiac, respiratory chest, O2 and CO2) and the goal will be to collaborate to find robust features that allow discerning between them.

Link to project:

• phys2bids
• Related issue

Mattermost handle:

• @drombas
• @smoia

Goals for the OHBM Brainhack

1. Find a set of features that allow us to classify the 4 signals in our dataset with 100% accuracy
2. (If time permits) Extend the algorithm to classify other signals (e.g. galvanic skin response)
3. (If time permits) Test the algorithm in other datasets

Good first issues:

• Create a google collab file for basic data loading and visualization
• Create a shared google document to share ideas/results

Skills:

• Basic knowledge of time-series analysis and programming is desirable but not required
• Creativity to come up with ideas

Number of participants: <= 10

Acknowledge contributions: Physiopy adopts the all-contributors system to recognise contributions. Contributors will be recognised as such in the relevant library README (e.g. here) and as authors during outreach (conference posters, talks, ...).

Documentation physiopy's contributors guidelines physiopy's code of conduct

Chat channel: ~hbm-physiopy

Image for the OHBM brainhack website

Project submission

Submission checklist

Once the issue is submitted, please check items in this list as you add under 'Additional project info'

Please include the following above (all required):

• [x] Link to your project: could be a code repository, a shared document, etc. See here
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• [x] Goals for the OHBM Brainhack: describe what you want to achieve during this brainhack. See here.
• [x] Flesh out at least 2 "good first issues": those are tasks that do not require any prior knowledge about your project, could be defined as issues in a GitHub repository, or in a shared document, cf here.
• [x] Skills: list skills that would be particularly suitable for your project. We ask you to include at least one non-coding skill, cf. here.
• [x] Chat channel: A link to a chat channel that will be used during the OHBM Brainhack. This can be an existing channel or a new one. We recommend using the Brainhack space on mattermost, cf. here.
• [x] Provide an image of your project for the OHBM brainhack website

You can also include information about (all optional):

• [ ] Someone co-leading the project in the timeslot you have not selected to provide additional visibility.
• [x] Number of participants, cf. here
• [ ] Twitter-size summary of your project pitch, cf. here
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• [ ] Project snippet for the OHBM Brainhack website, cf. here

We would like to think about how you will credit and onboard new members to your project. We recommend reading references from this section. If you'd like to share your thoughts with future project participants, you can include information about (recommended):

• [x] Specify how will you acknowledge contributions (e.g. listing members on a contributing page).
• [ ] Provide links to onboarding documents if you have some.

QMENTA has agreed to sponsor the event and provide computational resources through their platform.

• [ ] Get in touch with QMENTA through their Brain Innovation Hub Slack space, if you think your project would benefit from their support.

[tiborauer]

@drombas, Thank you for submitting your project. I wonder whether you want to upload another image for the website because this one is already part of another project: https://github.com/ohbm/hackathon2021/issues/12

[smoia]

Hey @tiborauer ! We're going to slightly change the image in #12 , but we'd prefer to keep this one here (and possibly in another project that will be submitted soon) because it comes from the same community...

[tiborauer]

I can see no problem in sharing images. I only wanted to make sure it is intended.

[drombas]

hi @ohbm/project-monitors: My project is ready!