Open TomMaullin opened 2 years ago
Dear @TomMaullin ,
Exciting project :)
It sounds like our brainhack cloud project (https://github.com/ohbm/hackathon2022/issues/50) could be very useful for your developments: 1) You could run dask on Kubernetes: https://brainhack.org/brainhack_cloud/docs/kubernetes/ 2) You could run a development HPC during brainhack: https://brainhack.org/brainhack_cloud/tutorials/hpc/
If you think this could be useful, make sure to sign up before the hackathon so we can create the accounts: https://brainhack.org/brainhack_cloud/docs/request/
Cheers Steffen
Thank you for submitting the project! We have 35 projects right now, woohoo! But that means the projects pitches will have to be short. We will give you tomorrow 2 minutes to pitch your project, you can have one slide or no slides! If you decide to use a slide, please include the link to the slide here.
And don't worry, you will still have more time to talk about your project during the BrainHack :-)
Title
Big Linear Modelling and Big Linear Mixed Modelling
Short description and the goals for the OHBM BrainHack
Large-scale, shared datasets are becoming increasingly commonplace in fMRI, challenging existing tools both in terms of overall scale and complexity of the study designs. As sample sizes grow, new opportunities arise to detect and account for grouping factors and covariance structures present in large experimental designs. To facilitate large sample analysis, we have created two Python toolboxes for use on HPC clusters:
At present, both tools are functioning and can be used for the analysis of tens of thousands of fMRI images. However, there is plenty that could be improved. Some of the goals we hope to address during the hackathon include:
Link to the Project
https://github.com/TomMaullin/BLMM
Image for the OHBM brainhack website
No response
Project lead
Thomas Maullin-Sapey Github: TomMaullin Discord: Tom Maullin
Main Hub
Glasgow
Other Hub covered by the leaders
Skills
Recommended tutorials for new contributors
Good first issues
Potential good first issues include:
Please let me know if you would like more information (@TomMaullin).
Twitter summary
BLMM - A toolbox for large-scale distributed fMRI Linear Mixed Model analyses. https://github.com/TomMaullin/BLMM @TomMaullin
OHBMHackathon #Brainhack #OHBM2022
Short name for the Discord chat channel (~15 chars)
BLMM
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