djarecka
commented
2 years ago Thank you for submitting the project! We have 35 projects right now, woohoo! But that means the projects pitches will have to be short. We will give you tomorrow 2 minutes to pitch your project, you can have one slide or no slides! If you decide to use a slide, please include the link to the slide here.
And don't worry, you will still have more time to talk about your project during the BrainHack :-)
mrneont
Title
BIDS derivatives naming for afni_proc.py output
Short description and the goals for the OHBM BrainHack
afni_proc.py creates a full pre-processing pipeline for a wide variety of MRI data, including alignment, motion correction, blurring, and regression modeling; outputs can be volumetric or projected onto surfaces, for single- or multi-echo data. Therefore, there is a variety of possible outputs. But afni_proc.py also has a dictionary of specific outputs that it populates, so the outputs are well-characterized and known.
It would be nice to formulate rules for BIDS-derivative-appropriate naming for these outputs, for populating a new directory with these NIFTI, JSON and other files.
Link to the Project
https://github.com/afni/ap_bids_deriv_names
Image for the OHBM brainhack website
No response
Project lead
Paul Taylor (github: mrneont; discord: Paul Taylor#5207)
Main Hub
Glasgow
Other Hub covered by the leaders
Skills
Some useful skills to have would be: BIDS derivatives experience FMRI processing interest/background AFNI Collaborative spirit! perhaps Python, if coding
Recommended tutorials for new contributors
Good first issues
No response
Twitter summary
BIDS-derivative naming for FMRI processing: afni_proc.py output
Short name for the Discord chat channel (~15 chars)
ap_bids_deriv_names
Please read and follow the OHBM Code of Conduct