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ohbm / hackathon2022

Website for the 2022 OHBM Hackathon
https://ohbm.github.io/hackathon2022/
MIT License
5 stars 11 forks source link

Bayes on the brain #79

Open kel-github opened 2 years ago

kel-github commented 2 years ago

Title

Bayes on the brain

Short description and the goals for the OHBM BrainHack

To write a tutorial notebook for Bayesian approaches to analysing fMRI data.

We aim to implement the equations from Friston & Penny (2007) Empirical Bayes and hierarchal models (SPM textbook). We also aim to simulate data and implement a basic analysis.

Link to the Project

https://github.com/crnolan/bayesonthebrain

Image for the OHBM brainhack website

https://upload.wikimedia.org/wikipedia/commons/d/d4/Thomas_Bayes.gif

Project lead

Kelly Garner [Github: kel-github Discord: kellygarner#2353] Christopher Nolan [Github: crnolan Discord: ChrisN#3806]

Main Hub

Glasgow

Other Hub covered by the leaders

Skills

skills include going through text resources (SPM textbook), implementing equations/data simulation in python, writing plain language explanations of the equations, going through matlab/SPM functions for implementations, and reading/using the tutorial and providing feedback

Recommended tutorials for new contributors

Good first issues

reading Friston & Penny (2007) Empirical Bayes and hierarchical models

Twitter summary

Let's demystify what is behind the Bayes button on the SPM GUI. Join us to implement Bayesian fMRI analyses and provide a tutorial for all.

Short name for the Discord chat channel (~15 chars)

Bayesonthebrain

Please read and follow the OHBM Code of Conduct

github-actions[bot] commented 2 years ago

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github-actions[bot] commented 2 years ago

Failed to process image: cannot identify image file 'img/projects/ad6132acbf39cf08a05e4fd6a3ccadb083d8d5f1.png'

github-actions[bot] commented 2 years ago

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github-actions[bot] commented 2 years ago

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effigies commented 2 years ago

Would suggest using this image instead: https://upload.wikimedia.org/wikipedia/commons/d/d4/Thomas_Bayes.gif

github-actions[bot] commented 2 years ago

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kel-github commented 2 years ago

Thanks for finding the new image!

likeajumprope commented 2 years ago

Hey @kel-github, maybe you want to run your notebook on our brand new brainhack cloud? https://brainhack.org/brainhack_cloud/

djarecka commented 2 years ago

Thank you for submitting the project! We have 35 projects right now, woohoo! But that means the projects pitches will have to be short. We will give you tomorrow 2 minutes to pitch your project, you can have one slide or no slides! If you decide to use a slide, please include the link to the slide here.

And don't worry, you will still have more time to talk about your project during the BrainHack :-)

kel-github commented 1 year ago

Thanks Johanna! We'll apply for resources shortly.

On Wed, 15 Jun 2022 at 09:10, Johanna Bayer @.***> wrote:

Hey @kel-github https://github.com/kel-github, maybe you want to run your notebook on our brand new brainhack cloud? https://brainhack.org/brainhack_cloud/

— Reply to this email directly, view it on GitHub https://github.com/ohbm/hackathon2022/issues/79#issuecomment-1156138815, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABXC34ZA2MW47KTFUGZ34RTVPGFXRANCNFSM5YXIMWLA . You are receiving this because you were mentioned.Message ID: @.***>

-- Kelly Garner, PhD, she/her Postdoctoral Research Fellow

Google Scholar https://scholar.google.co.uk/citations?user=nmeSlZkAAAAJ&hl=en ResearchGate https://www.researchgate.net/profile/Kelly_Garner

*UQ ALLY :: Supporting the diversity of sexuality, sex and gender at UQ.*

--I acknowledge the Traditional Owners of the land upon which I live and work. I pay my respects to Elders past, present and emerging.--

--I seek to maintain a good work-life balance. If you receive this email outside office hours then don’t feel you have to respond. Please expect the like from me.--

github-actions[bot] commented 1 year ago

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github-actions[bot] commented 1 year ago

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github-actions[bot] commented 1 year ago

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github-actions[bot] commented 1 year ago

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github-actions[bot] commented 1 year ago

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github-actions[bot] commented 1 year ago

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github-actions[bot] commented 10 months ago

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