DiffSimViz

[Bradley-Karat]

Title

DiffSimViz

Short description and the goals for the OHBM BrainHack

DiffSimViz (Diffusion Simulator Visualizer) will be a python toolbox with the aim of providing intuitive visualizations of particle diffusion in different media/microstructure. This will ideally include an interface to choose particular media to visualize diffusion within, as well as to change parameters such as diffusion time and membrane permeability. The use of such a visualizer will be didactic, or for researchers to better understand what their diffusion MRI signal might look like in particular microstructural environments.

Link to the Project

https://github.com/Bradley-Karat/DiffSimViz

Image for the OHBM brainhack website

No response

Project lead

Bradlet Karat, Github: @Bradley-Karat, Discord: brad_karat

Main Hub

Montreal

Other Hub covered by the leaders

• [X] Montreal
• [ ] Asia / Pacific
• [ ] Europe / Middle East / Africa
• [ ] Americas

Skills

• Python
• Diffusion MRI
• Visualization generation

Recommended tutorials for new contributors

• [X] Set up a brainhack friendly computing environment
• [ ] A introduction to Bash
• [X] Python: Writing a script
• [ ] Python: Data analysis with Python
• [X] Python: Visualisation
• [ ] Machine learning basics
• [ ] BIDS
• [ ] Machine learning for neuroimaging
• [ ] VCS: Using Git and Github
• [ ] VCS: Data management with Datalad
• [X] Virtualization
• [ ] High Performance Computing: Oracle cloud resource

Good first issues

No response

Twitter summary

No response

Short name for the Discord chat channel (~15 chars)

DiffSimViz

Please read and follow the OHBM Code of Conduct

• [X] I agree to follow the OHBM Code of Conduct during the hackathon

[ufangYang]

hi @Bradley-Karat can you provide the content and/or figure for this project to be added to Brainhack Proceeding 2023 by 15th May? Also, please don't forget to fill out your team member's details using this form: https://forms.gle/Ku3AVHcXvpUqVVkV7 . Cheers