boldGPT

[clane9]

Title

boldGPT

Short description and the goals for the OHBM BrainHack

Humans struggle to "see" the structure in functional MRI (BOLD) brain maps. Our goal is to train a GPT that understands brain maps better than humans. This kind of "foundation" model should be useful for things like phenotype prediction and brain activity decoding. Plus it will hopefully generate neat fake brain maps.

Link to the Project

https://github.com/clane9/boldGPT

Image for the OHBM brainhack website

https://github.com/clane9/boldGPT/raw/main/.github/images/boldgpt.png

Project lead

Connor Lane GitHub: clane9 Discord: connortslane

Main Hub

Montreal

Other Hub covered by the leaders

• [ ] Montreal
• [ ] Asia / Pacific
• [ ] Europe / Middle East / Africa
• [ ] Americas

Skills

• python
• fMRI
• deep learning
• pytorch

Recommended tutorials for new contributors

• [ ] Set up a brainhack friendly computing environment
• [ ] A introduction to Bash
• [ ] Python: Writing a script
• [X] Python: Data analysis with Python
• [ ] Python: Visualisation
• [X] Machine learning basics
• [ ] BIDS
• [X] Machine learning for neuroimaging
• [ ] VCS: Using Git and Github
• [ ] VCS: Data management with Datalad
• [ ] Virtualization
• [ ] High Performance Computing: Oracle cloud resource

Good first issues

No response

Twitter summary

No response

Short name for the Discord chat channel (~15 chars)

boldgpt

Please read and follow the OHBM Code of Conduct

• [X] I agree to follow the OHBM Code of Conduct during the hackathon

[ufangYang]

hi @clane9, can you provide the content and/or figure for this project to be added to Brainhack Proceeding 2023 by 15th May? Also, please remember to fill out your team member's details using this form: https://forms.gle/Ku3AVHcXvpUqVVkV7 . Cheers