Open nikhil153 opened 2 months ago
@nikhil153 Thanks for submitting this amazing project. We encourage including a short Twitter summary along with your project submission for us to be able to promote the project during the brainhack. Apart from that, all is good to go!
Looking forward to seeing you in Seoul.
@sina-mansour - I have added the Twitter summary based on the guidelines. Let me know if anything else comes up! Thanks!
Thanks for the quick response @nikhil153 . All looks good to me, looking forward to seeing you in Seoul!
Title
Poppy & Bagel: How to FAIRly curate, process, and share your neuroimaging datasets
Short description and the goals for the OHBM BrainHack
Curating data, running reproducible pipelines, creating data dictionaries, integrating data from collaborators, making sensitive data FAIR - these tasks are hard; and we all have to deal with them every day. Here we aim to serve Nipoppy and Neurobagel - a set of protocols and tools with modular framework that one can adopt as needed to simplify common data organization, processing, harmonization, and sharing tasks on neuroimaging datasets.
We cover BIDSification, containerized processing with completion tracking, annotation of phenotypic data, and generation of knowledge graphs for distributed data discovery and sharing.
This is a useful project for those who:
We have experienced all these issues ourselves in the past, and so we are here to prevent future grief to newcomers!
Link to the Project
https://nipoppy.readthedocs.io/en/latest/index.html
Image/Logo for the OHBM brainhack website
https://raw.githubusercontent.com/neurobagel/documentation/main/docs/imgs/logo/neurobagel_logo.png
Project lead
Michelle Wang: michellewang Brent McPherson: bcmcpher Sebastian Urchs: surchs Nikhil Bhagwat: nikhil153
Main Hub
Seoul
Link to the Project pitch
https://docs.google.com/presentation/d/10cXPlcPPVaShkpH-Mw1vNuk-iNA4ruDfoYrMAA6Llmg/edit?usp=sharing
Other hubs covered by the leaders
Skills
This is for anyone looking to adopt and contribute to the best practices for neuroimaging data workflows. If you wrangle with data, you can contribute! Technical skills are useful but not a strong prerequisite.
Technical
Non-technical
Recommended tutorials for new contributors
No response
Good first issues
No response
Twitter summary
Poppy & Bagel: How to FAIRly curate, process, and share your neuroimaging datasets https://github.com/neurodatascience/nipoppy @michelle__wang
OHBMHackathon #Brainhack #OHBM2024 #OHBM_Brainhack_2024
Short name for the Discord chat channel (~15 chars)
poppy_bagel
Please read and follow the OHBM Code of Conduct