Neurosynth Compose: Ecosystem for Reproducible Meta-Analyses
Short description and the goals for the OHBM BrainHack
We are aiming to make meta-analyses more systematic, reproducible, and overall less painful with an online interface and lots of pre-ingested data for you to use freely!
Our platform now hosts over 30,000 neuroimaging papers that report coordinates, making the arduous phase of transcribing coordinates simpler than ever.
We have a number of projects to work on, whether it's your first time programming or if you're a seasoned veteran.
Novice
Test out our sleuth file import feature (try to break it and give feedback)
Work on a script to add DOI/PMID to the sleuth files automatically
Use our tutorial and give feedback
Help validate paper-extracted information from GPT
Intermediate
write code to create figures to do some exploratory data analysis/Validation on data we've ingested.
formalize the DOI/PMID adding script into a function in NiMARE
profile memory consumption in running the NiMARE reports CBMA module
James Kent @jdkent jdkent
Alejandro De La Vega @adelavega neurozorro
Julio Peraza @JulioAPeraza N/A
Main Hub
Seoul
Link to the Project pitch
No response
Other hubs covered by the leaders
[X] Seoul
[ ] Hybrid (Asia / Pacific)
[ ] Hybrid (Europe / Middle East / Africa)
[X] Hybrid (Americas)
Skills
None
Ran a meta-analysis before (using any technology)
written a bash script
read in files with python
use plotting libraries with python
created a pull request using git/github
Recommended tutorials for new contributors
No response
Good first issues
No response
Twitter summary
If you're interested in or learning about meta-analyses, AI, data engineering, and everything in between, come checkout Neurosynth Compose! We have projects for every skill level.
Short name for the Discord chat channel (~15 chars)
neurosynth-compose
Please read and follow the OHBM Code of Conduct
[X] I agree to follow the OHBM Code of Conduct during the hackathon
Title
Neurosynth Compose: Ecosystem for Reproducible Meta-Analyses
Short description and the goals for the OHBM BrainHack
We are aiming to make meta-analyses more systematic, reproducible, and overall less painful with an online interface and lots of pre-ingested data for you to use freely!
Our platform now hosts over 30,000 neuroimaging papers that report coordinates, making the arduous phase of transcribing coordinates simpler than ever.
We have a number of projects to work on, whether it's your first time programming or if you're a seasoned veteran.
Novice
Intermediate
Advanced
Link to the Project
https://github.com/neurostuff/neurostore
Image/Logo for the OHBM brainhack website
https://github.com/neurostuff/neurostore/blob/master/compose/neurosynth-frontend/public/static/synth.png
Project lead
James Kent @jdkent jdkent Alejandro De La Vega @adelavega neurozorro Julio Peraza @JulioAPeraza N/A
Main Hub
Seoul
Link to the Project pitch
No response
Other hubs covered by the leaders
Skills
Recommended tutorials for new contributors
No response
Good first issues
No response
Twitter summary
If you're interested in or learning about meta-analyses, AI, data engineering, and everything in between, come checkout Neurosynth Compose! We have projects for every skill level.
Short name for the Discord chat channel (~15 chars)
neurosynth-compose
Please read and follow the OHBM Code of Conduct