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ohdsi-studies / Covid19SubjectsAesiIncidenceRate

Extending on our previous work by Li et al. in understanding the incidence rates of adverse events of special interest (AESI) for COVID-19, this work will look at the rates of these AESIs in patients who had COVDI-19 disease.
https://ohdsi-studies.github.io/Covid19SubjectsAesiIncidenceRate/Protocol.html
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Missing Feature Extraction Results #30

Closed ericaVoss closed 2 years ago

ericaVoss commented 2 years ago

Both for this study and the previous AESI study we have noticed that APHM didn’t seem to run the feature extraction portion of Cohort Diagnostics. But the log doesn’t seem to indicate that there is any issue (see attached). Do you have any suggestions of what direction I could go in to trouble shoot this?

Steps to see issue: • https://data.ohdsi.org/Covid19SubjectsAesiIncidenceRate/ • Navigate to Cohort Characteristics • Select APHM as well as IPCI as the DB • If you select Cohort C1 – you’ll see how APHM is missing medical history

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@tlecarrour-ee @Frabs

Covid19SubjectsAesiIncidenceRate_log.txt

ericaVoss commented 2 years ago

@tlecarrour-ee & @Frabs do you have CONDITION_ERA populated?

ericaVoss commented 2 years ago

Looks like the CONDITION_ERA was not populated, we are going to populate and rerun.

ericaVoss commented 2 years ago

@tlecarrour-ee & @Frabs, populating the CONDITION_ERA solved the problem. I will update the CohortDiagnostics link soon, but locally things look good.

Thanks to @schuemie who figured out the issue.