Can I use GRiD in metatranscriptomic data?

ohlab / GRiD

Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).

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Can I use GRiD in metatranscriptomic data? #20

Open JX-Zhong opened 4 years ago

JX-Zhong commented 4 years ago

Hello I want to estimate replicated ratio in Metatranscriptome data.

aemiol commented 4 years ago

Hi, Unfortunately you can't since transcript levels are independent of gene proximity to origin of replication.

Cheers, Tunde