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ohlab / GRiD

Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).
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Problem while installing: Frozen environment and __glibc #29

Open JanBruewer opened 2 years ago

JanBruewer commented 2 years ago

Dear Akintunde and Julia, I have previously used GRiD on our servers and was very excited about the results. I now want to re-install it (due to new Miniconda version) and continuously receive the same error. I have re-installed Miniconda and Anaconda, I have installed different versions of Conda (4.10. and 4.6), and I have tried to use different Python versions (3.10, 3.9, 3.8, 2.8).

conda install grid=1.3 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: \ Found conflicts! Looking for incompatible packages. failed
UnsatisfiableError: The following specifications were found to be incompatible with each other: Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your system:

  • feature:/linux-64::__glibc==2.24=0
  • feature:|@/linux-64::__glibc==2.24=0 Your installed version is: 2.24

Here is my conda info (with Conda 4.10):

active environment : GRiD active env location : /home/jbruewer/miniconda3/envs/GRiD shell level : 2 user config file : /home/jbruewer/.condarc populated config files : /home/jbruewer/.condarc conda version : 4.10.3 conda-build version : not installed python version : 3.9.5.final.0 virtual packages : linux=4.9.0=0 glibc=2.24=0 unix=0=0 archspec=1=x86_64 base environment : /home/jbruewer/miniconda3 (writable) conda av data dir : /home/jbruewer/miniconda3/etc/conda conda av metadata url : None channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://conda.anaconda.org/bioconda/linux-64 https://conda.anaconda.org/bioconda/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /home/jbruewer/miniconda3/pkgs /home/jbruewer/.conda/pkgs envs directories : /home/jbruewer/miniconda3/envs /home/jbruewer/.conda/envs platform : linux-64 user-agent : conda/4.10.3 requests/2.25.1 CPython/3.9.5 Linux/4.9.0-16-amd64 debian/9.13 glibc/2.24 UID:GID : 60641:1160 netrc file : None offline mode : False

JanBruewer commented 2 years ago

Resolved. I tried it in the new year and it works perfectly fine now (Yay!). Unfortunately, I don't know what went wrong but at least it is working now.. :-)