add deduplication option

ohmeta / metapi

A general metagenomics data mining system focus on robust microbiome research

https://ohmeta.github.io

GNU General Public License v3.0

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Closed juyanmei closed 2 years ago

juyanmei commented 2 years ago

Since fastp v0.22.0, fastp supports deduplication for FASTQ data. Specify -D or --dedup to enable this option. https://github.com/OpenGene/fastp#duplication-rate-and-deduplication Hope you could add this option in metapi. Thanks~

alienzj commented 2 years ago

Great! Thanks for your suggestion. Hope can support this feature at the next release.

alienzj commented 2 years ago

Now metapi v2.4.0 (https://github.com/ohmeta/metapi/releases/tag/v2.4.0) support fastp with parameter --dedup.

alienzj commented 2 years ago