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ohnosequences / mg7

Configurable and scalable 16S metagenomics data analysis
https://goo.gl/y3rZFD
GNU Affero General Public License v3.0
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Specify test input data #115

Closed eparejatobes closed 7 years ago

eparejatobes commented 7 years ago

We need a definitive specification of test input data, both Illumina and PacBio. I'm going to arrange a meeting for this.

marina-manrique commented 7 years ago

👍

marina-manrique commented 7 years ago

@eparejatobes @rtobes

here you can see the Illumina data we have for the mock communities

https://github.com/ohnosequences/mg7/pull/104#issuecomment-240657111

and here the list of organisms of each mock community https://github.com/ohnosequences/mg7/blob/91401e1e26dcea498d7f28bb39ecf7daa4eff40f/src/test/scala/mg7/testData.scala#L37

There are 2 communities (one with even concentration and the other one staggered) and we have 3 replicas per community (6 datasets in total). In my opinion it would be good to analyse everything to know how MG7 handles replicas although we pick later on only one dataset per community for the release testing, WDYT?

rtobes commented 7 years ago

I agree

marina-manrique commented 7 years ago

I discussed this with @eparejatobes as well and he agrees on running all the samples.

laughedelic commented 7 years ago

I'd like to see this with @marina-manrique and/or @eparejatobes (next week?). I'm not sure how testData is supposed to be used.

marina-manrique commented 7 years ago

Sure, what about next Monday morning?

laughedelic commented 7 years ago

OK

marina-manrique commented 7 years ago

@laughedelic @eparejatobes at 11 am at the coworking space?

laughedelic commented 7 years ago

@marina-manrique I just remembered that I arranged a meeting with Manuel on Monday morning 😓 sorry!! Can we shift this meeting later on Monday or Tuesday?

UPD

Agreed on Tuesday 11am at the coworking.

laughedelic commented 7 years ago

Meeting summary: