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ohnosequences / mg7

Configurable and scalable 16S metagenomics data analysis
https://goo.gl/y3rZFD
GNU Affero General Public License v3.0
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Preprocessing of Mock communities reads #116

Closed marina-manrique closed 7 years ago

marina-manrique commented 8 years ago

@eparejatobes @rtobes is it fine for you to run this reads preprocessing?

trim_galore --quality 20 --fastqc --output_dir outputDir --paired reads1GZ reads2GZ

from the user manual --quality

Trim low-quality ends from reads in addition to adapter removal.

rtobes commented 8 years ago

OK

marina-manrique commented 7 years ago

The preprocessed reads are ready s3://resources.ohnosequences.com/ohnosequences/mg7/mock-communities-data/illumina/

laughedelic commented 7 years ago

Is it done?

marina-manrique commented 7 years ago

yep, here s3://resources.ohnosequences.com/ohnosequences/mg7/mock-communities-data/illumina/

laughedelic commented 7 years ago

OK, I'm closing this then