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ohnosequences / mg7

Configurable and scalable 16S metagenomics data analysis
https://goo.gl/y3rZFD
GNU Affero General Public License v3.0
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Pipelines without split/merge #21

Closed laughedelic closed 7 years ago

laughedelic commented 8 years ago

I had this idea to define an MG7 pipeline without splitting and merging reads, i.e. just

  1. flash: merging paired end reads
  2. blast: processing each reads dataset with blast
  3. assignment: assigning taxons (LCA and BBH)
  4. counting: counting assignments

which could be useful if the reads datasets are not so big.

@marina-manrique @eparejatobes does it make sense in general/in some cases?

laughedelic commented 7 years ago

Closing as outdated and not-so-useful.