This happens because I have changed the way assignment table is parsed: it's read now to a Map[TaxID, ...] instead of just list of TaxIDs, and then .keys is used for direct counting, which of course removes the keys duplicates. It's easy to fix, especially after fixing #33, we don't need that Map at all.
This happens because I have changed the way assignment table is parsed: it's read now to a
Map[TaxID, ...]instead of just list ofTaxIDs, and then.keysis used for direct counting, which of course removes the keys duplicates. It's easy to fix, especially after fixing #33, we don't need that Map at all.